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Wednesday, December 18, 2013

Something the Lord Made

For 30 points Extra Credit, answer these questions on on a sheet of paper.
1.     Give one reason why Mr. Thomas operated on the hearts of dogs in Dr. Blalock's research laboratory when he was preparing for the blue baby operations.
2.     How did Mr. Thomas lose his college savings?
3.     Why was it difficult for Vivien Thomas to get a job once he had decided that he was not going to be able to go to college?
4.     Was Dr. Blalock a racist or a man who did as much as he could to help Vivien Thomas have a fulfilling career? Explain.
5.     What role did racism play in the fact that Dr. Blalock was able to keep Vivien Thomas as a lab assistant for so many decades and benefit from Thomas' work without giving him credit?
6.     Leaving aside the question of whether Dr. Blalock should have encouraged Mr. Thomas to attend college and become a surgeon, describe why the Blalock/Thomas team is an example of effective teamwork.
7.     Did Dr. Blalock act in a caring manner toward Mr. Thomas? Give examples to support your answer.
8.     Why did Vivien Thomas cause such a controversy when he went out of the lab in his white lab coat?
9.     It is said that Vivien Thomas opened new paths to healing when most doors were closed to him. What is meant by that?
10. Dr. Levi Watkins, one of the first black graduates of the Johns Hopkins surgery program said this about Vivien Thomas: "I think he is the most untalked about, unappreciated, unknown giant in the African American community. What he helped facilitate impacted people all over the world." Given the fact that Vivien Thomas never participated in a demonstration demanding civil rights or filed a law suit to enforce his rights, what did Dr. Watkins mean?
11. Was the first blue baby operation an experiment, as the Priest charged?
12. After Dr. Blalock and Dr. Taussig took full credit for the operation and didn't given Mr. Thomas any credit, the character of Vivien Thomas in the movie says to Blalock: "I'm invisible to the world. I don't mind that. I understand that. I thought it was different in here." What did he mean?
13. At the end of the film, Dr. Blalock says to Mr. Thomas, "They say you haven't lived unless you have a lot to regret. I regret .... I have some regrets. But I think we should remember not what we lost but what we've done ... all the lives we saved and we did. We saved plenty didn't we Vivien?" What do you think that Blalock was talking about?

Monday, December 2, 2013

Thursday, November 14, 2013

GATTACA

GATTACA Interview Part I
Journal Page 38 

Interviewee’s name _____________________
  1. If humans decided to begin living on another planet, would you want to go?  Why or why not?
  2. Who do you think should be allowed to go to the new planet?  Anyone or only the “best” humans?
  3. Have you ever wished that you could change something about yourself? If you could, would you?
  4. How far would you go to do it?  (Ex: money, pain, sacrifice, fingers or toes, ANYTHING?)



GATTACA Interviews Part II
Journal Page 38

Interviewee’s name _____________________
  1. What experiences have you had with discrimination in your life? (yourself or to others)
  2. How do you feel about the type of “genetic discrimination” shown in the film?
  3. What parts of this movie do you think might someday become reality?  Why? When?
  4. Do you think that Jerome (Vincent) is going to make it to the other planet?  Why or why not?
  5. Did you thank your interviewee for their time?
link to Part II Survey

GATTACA Interviews Part III
Journal Page 38

Interviewee’s name _____________________

  1. If you could have your boy/girl friend “sequenced” to see how good a “catch” they are, would you?  How much would you pay?  What would you want to know?
  2. If you could parent a “Designer Baby,” would you want to?  Why or Why not?
  3. If you did have a “designer baby” what advantages & disadvantages would you expect?
  4. What concerns do you have about DNA/genetic technology?
  5. What benefits do you think DNA/genetic technology could provide society?



Thursday, November 7, 2013

13.3

Click here to download 13.3

13-3 DNA Mutations Vocabulary

Define these terms on Journal Page36
  1. mutation
  2. point mutation
  3. frameshift mutation
  4. mutagen
  5. polyploidy
  6. reproductive cell
  7. body cell
  8. chromosomal mutation
  9. deletion
  10. duplication
  11. inversion
  12. translocation

Figure 13-11

Monday, November 4, 2013

Blame it on the DNA Lyrics - Extra Credit due Friday 3/25

COPY AND FILL IN THE BLANKS!  Do not Print out and fill in the blanks...* Email not accepted,

 Blame it on the DNA music video

Blame it on the DNA – fill in the lyrics!

Blame it on the _____________ if your eyes are green Six fingers on your hands. Blame it on the strands. Blame it on the DNA. Blame it on the _____________. Ay you know it’s in the helix. _____________ bonds seal it. When it gets unraveled it makes _____________ travel From the nucleus to the _____________. Ribosomes it has ‘em translate into amino acids making _____________. _____________ bases dictate your races by protein we makin’. Transcription. _____________. You make mRNA from your genes all day Then translate it into _____________ chains. Of which you gotta lotta, that’s the Central _____________. DNA to tissue can be quite an issue if you’ve got a _____________ disease. Blame it on the rungs if you can’t roll your _____________. Blame it on the _____________ pairs if you’ve got some red hair. Blame it on the DNA. Blame it on the _____________. Blame it on the chromosomes, blame it on the _____________. If you’re haemophilic and can’t heal it. Blame it on the DNA. Blame it on the _____________. _____________ rays can mutate a gene so it codes for the wrong protein. Replace a C for a T. A _____________ mutation can change the amino acid. The change is final. You might be an _____________ Depending on what gene gets messed, What proteins are _____________. This is genetics! Nitrogenous bases dictate your races by protein we makin’. _____________. Translation. You make mRNA from your genes all day Then translate it into polypeptide chains. Of which you gotta lotta, that’s the _____________ Dogma. _____________ to tissue can be quite an issue if you’ve got a genetic disease. Blame it on the genes if your eyes are green Six fingers on your hands. Blame it on the _____________. Blame it on the DNA. Blame it on the cytosine. Blame it on the _____________, blame it on the helix. If you’re haemophilic and can’t heal it. Blame it on the _____________. Blame it on the guanine.

mRNA Translation Video and BONUS extra credit video



RNA Translation Video (basic)


RNA Translation Video (advanced)


Blame it on the DNA
Blame it on the DNA – finish the lyrics!
Blame it on the _____________ if your eyes are green
Six fingers on your hands.  Blame it on the strands. 
Blame it on the DNA.  Blame it on the _____________.
Ay you know it’s in the helix.  _____________ bonds seal it.
When it gets unraveled it makes _____________ travel
From the nucleus to the _____________.
Ribosomes it has ‘em translate into amino acids making _____________.
_____________ bases dictate your races by protein we makin’.
Transcription. _____________.
You make mRNA from your genes all day
Then translate it into _____________ chains.
Of which you gotta lotta, that’s the Central _____________.
DNA to tissue can be quite an issue if you’ve got a _____________ disease.
Blame it on the rungs if you can’t roll your _____________.
Blame it on the _____________ pairs if you’ve got some red hair.
Blame it on the DNA.  Blame it on the _____________.
Blame it on the chromosomes, blame it on the _____________.
If you’re haemophilic and can’t heal it.
Blame it on the DNA.  Blame it on the _____________.
_____________ rays can mutate a gene so it codes for the wrong protein.
Replace a C for a T.  A _____________ mutation can change the amino acid.
The change is final.  You might be an _____________
Depending on what gene gets messed,
What proteins are _____________. This is genetics!
Nitrogenous bases dictate your races by protein we makin’.
_____________. Translation.
You make mRNA from your genes all day
Then translate it into polypeptide chains.
Of which you gotta lotta, that’s the _____________ Dogma.
_____________ to tissue can be quite an issue if you’ve got a genetic disease.
Blame it on the genes if your eyes are green
Six fingers on your hands.  Blame it on the _____________. 
Blame it on the DNA.  Blame it on the cytosine.
Blame it on the _____________, blame it on the helix.
If you’re haemophilic and can’t heal it.
Blame it on the _____________.  Blame it on the guanine.


Be thankful this thanksgiving season and be thankful that I don't show this anymore..
 

Wednesday, October 30, 2013

13.2 Protein Synthesis Vocabulary

On J. Pg. 31
  1. polypeptide
  2. genetic code
  3. codon
  4. translation
  5. anticodon
  6. gene expression
  7. gene
  8. uracil
  9. protein
  10. synthesis 
  11. ribosome
  12. amino acid
  13. peptide
  14. peptide bond

Tuesday, October 29, 2013

13.2 & Transcription Diagram

Due Thurdsay 10/31/13


Click here to download the section


Here is one of the diagrams you draw on J. Pg. 29. Include labels and diagram.



Tuesday, October 22, 2013

DNA Structure Chapter 12 Test Review

Test is Thursday October 22, 2013

Review Journal Pages 14-26 especially:
History of DNA notes (J.Pg. 15)
Structure of DNA notes (J.Pg. 19)
DNA Replication notes (J.Pg. 24)

Here are the sections again...
12.1
12.2
12.3

Review Questions, answer the following on J. Pg. 26
#s 1-5, 7-8, 9-12, 20-21, 24-25, 27-28, 32-34
Click here to download the questions and the STUDY GUIDE

For more help watch this Kahn Academy lesson on DNA...
https://www.youtube.com/watch?v=_-vZ_g7K6P0



I usually recommend the above but this is good too...


If you need a break, enjoy these DNA tunes...

 Walking Through the Gene

We've Really Got the Code on You

Monday, October 21, 2013

DNA Replication Videos

DNA Replication (basic) ...

 


DNA Replication (advanced)...
 

 


Friday, October 18, 2013

Blame it on the DNA

Blame it on the DNA...
 

Blame it on the DNA – finish the lyrics!

Blame it on the _____________ if your eyes are green
Six fingers on your hands.  Blame it on the strands. 
Blame it on the DNA.  Blame it on the _____________.

Ay you know it’s in the helix.  _____________ bonds seal it.
When it gets unraveled it makes _____________ travel
From the nucleus to the _____________.
Ribosomes it has ‘em translate into amino acids making _____________.

_____________ bases dictate your races by protein we makin’.
Transcription. _____________.
You make mRNA from your genes all day
Then translate it into _____________ chains.
Of which you gotta lotta, that’s the Central _____________.
DNA to tissue can be quite an issue if you’ve got a _____________ disease.

Blame it on the rungs if you can’t roll your _____________.
Blame it on the _____________ pairs if you’ve got some red hair.
Blame it on the DNA.  Blame it on the _____________.
Blame it on the chromosomes, blame it on the _____________.
If you’re haemophilic and can’t heal it.
Blame it on the DNA.  Blame it on the _____________.

_____________ rays can mutate a gene so it codes for the wrong protein.
Replace a C for a T.  A _____________ mutation can change the amino acid.
The change is final.  You might be an _____________
Depending on what gene gets messed,
What proteins are _____________. This is genetics!

Nitrogenous bases dictate your races by protein we makin’.
_____________. Translation.
You make mRNA from your genes all day
Then translate it into polypeptide chains.
Of which you gotta lotta, that’s the _____________ Dogma.
_____________ to tissue can be quite an issue if you’ve got a genetic disease.

Blame it on the genes if your eyes are green
Six fingers on your hands.  Blame it on the _____________. 
Blame it on the DNA.  Blame it on the cytosine.
Blame it on the _____________, blame it on the helix.
If you’re haemophilic and can’t heal it.
Blame it on the _____________.  Blame it on the guanine.
 

Thursday, October 17, 2013

12.3 DNA Replication Vocabulary

Define the following vocabulary terms on J. Pg. 21
  1. replication
  2. DNA polymerase
  3. telomere
  4. unzip
  5. replication fork
  6. hydrogen bond
  7. enzyme
  8. semiconservative

Wednesday, October 16, 2013

Thursday, October 10, 2013

Cracking the Code of Life Video

Click here to watch the video.

Journal Page 20: Video Notes: Cracking the Code of Life

Directions:

"Cracking the Code of Life" is divided into 16 sections . For each section, use the set of words to construct a sentence which summarizes that section.

1. Instructions for a Human Being
* human
* DNA
* genome
2. Getting the Letters Out
* DNA
* computers
* process
3. One Wrong Letter
* Tay-Sachs
* mutation
* gene
4. The Sequencing Race Begins
* Celera Genomics
* automation
* genome
5. Ramping up
* Celera
* Internet
* data
6. Genetic Variation
* mapping
* humans
* animals
7. Who Owns the Genome?
* code
* patent
* research
8. The Business of Science
* income
* science
* business
9. Finding Cures is Hard
* cystic fibrosis
* protein
* DNA
10. Complexity in Proteins
* proteome
* mutation
* gene
11. The Finish Line
* race
* Celera
* genome
12. Finding Disease Genes
* Iceland
* osteoarthritis
* genes
13. DNA Databases
* DNA
* database
* chip
14. A Family Diseas
* breast cancer
* BRCA
* ovarian cancer
15. Genetic Modification
* enhancement
* manipulation
* gene
16. Contemplating the Message
* Celera
* gene
* chromosome

Wednesday, October 9, 2013

DNA Structure (12.2) Vocabulary due Wednesday 10/10/13

Define each term in your Journal page 16

  1. base pairing
  2. Nucleic Acid
  3. nucleotide
  4. nitrogenous base (define and name the 4 nitrogenous bases))
  5. double helix
  6. sequence
  7. deoxyribose
  8. covalent bond
  9. hydrogen bond
  10. antiparallel 
Click Here to download the Glossary

CLICK HERE to download Section 12.2

Here is an updated zip file of all the sections (this is a fairly large file, about 100MB)

Monday, October 7, 2013

12.2

CLICK HERE to download

1 page reading notes due Wednesday 10/9/13

Here is an animations showing Avery's early DNA experiment...

Avery : http://www.dnaftb.org/17/animation.html

And The Story of Rosalind Franklin vs. Watson and Crick as told by Oakland 7th graders...


Tuesday, October 1, 2013

12.1

12.1 Reading Notes are due Wednesday, 10/2/13

CLICK HERE to download the section

12.1 Vocabulary, define these words on J.Pg.14
  1. transformation
  2. bacteriophage
  3. gene
  4. genetics
  5. bacteria
  6. virus
  7. DNA
Click Here to download the Glossary

Monday, September 30, 2013

Ch. 1 / Intro Test (Sci Method, COL, Levels of Organization, Metric)

Topics on Test...

Scientific Method
-Hypothesis vs. Theory
-Qualitative vs. Quantitative
-Variables: Independent vs. Dependent vs. Controls

Characteristics of Life
-know & define all 7
-emphasis on Homeostasis and Stimulus/Response

Levels of Organization
elements -> molecules -> cells -> tissues -> organs -> organ systems

4 Biological Molecules (macromolecules)
- proteins, lipids, carbohydrates, nucleic acids

Most common elements in life
C - carbon
H - hydrogen
N - nitrogen
O - oxygen
P - phosphorus
S - sulfur

Metric System
- know the units for length, mass, volume (meters, grams, liters)

Tuesday, September 24, 2013

Pill Bug Lab Report

Collecting Biological Data

Question/ Problem: What life characteristics can be observed in a pill bug?
Objectives:
  1. Observe whether life characteristics are present in a pill bug
  2. Discuss procedures for measuring and recording data
  3. Discuss proper care of living organisms during an experiment
  4. Hypothesize methods for making and studying quantitative and qualitative characteristics of an organism during an experiment
  5. Create neat, organized, labeled charts, tables, and graphs of data for analysis.
Materials:
For Experiment 1: Pill bug toothpick watch glass or petri dish
Metric ruler dissecting microscope clock/watch with seconds
Procedure:
  1. Write your hypothesis in your notebook. (Remember to make it a statement with a reason or explanation that answers the problem)
  2. Carefully obtain a pill bug from your teacher.
Experiment 1:
  1. Observe your pillbug with your naked eye, a hand lens and under a dissecting microscope.
  2. Record a list of qualitative observations of your organism. A qualitative observation is a descriptive observation.
  3. Record a list of quantitative observations of your organism. A quantitative observation is a numerical observation.
  4. Make an accurate, neat, colored drawing of the organism. This drawing should be larger than the actual size. (Multiple angles can be useful)
  5. Describe any sensory structures (organs) that the organism possesses. Be sure to go back and label these structures on your drawing.
  6. Measure in millimeters the length and width of your pill bug and label this on your drawing. Post your measurement for length on the board with the rest of the class data.
  7. Construct a bar graph of everyone’s data for length. Be sure to label the title, axis, and units of measurement.
Experiment 2:
  1. Gently touch the underside of the pill bug with a toothpick. It may be necessary to gently flip the pill bug over with the pencil to get at its underside. Caution: Use care to avoid injuring the pill bug.
  2. Record a description of the pill bugs response.
  3. Record the time, in seconds, how long the pill bug remains curled up. Repeat this four more times. Then calculate the average response time
  4. Answer lab questions 1-5 before beginning experiment 3.

Conclusion: Follow the directions on how to write a laboratory report. Be sure to explain which parts of your hypothesis are supported, which are not supported, and which need further investigation. Be specific and give detailed reasoning and experimental data to support your conclusions.


Collecting Biological Data: Lab Report Template


Purpose:
This should be a one or two sentence explanation of the objectives and the problem being tested.

Hypothesis: Answer the problem (give your reasoning).

Procedure:
Experiment 1: See lab handout.
Experiment 2: See lab handout.

Data:

Experiment 1:

Quantitative Observations

Qualitative Observations

See below for suggestions

List things you can count...
Number of legs, eyes, antennae, segments


Length in mmWidth in mm
Small mmmm
Bigmmmm

See below for suggestions

What does it look, feel, smell, sound like?
Describe its color, shape, form, behavior, odor and feel.





Labeled Diagram(s) of Pill Bug:
(This may be attached at the end, but then write see attached in this spot)




Bar Graph of length:
(Use excel to graph the class data)

Experiment 2:

Trial
Time (seconds)
Pill Bug Response
Researchers notes



(ex. Sources of error, changes in experiment, bug, etc.)













Average Time:





OR

Large Pill Bug
Small Pill Bug
TrialResponse TimeTrialResponse Time
1
1
2
2
3
3
4
4



Experiment 3:
(Design your own data table(s) to record relevant information. Don’t forget titles!)

Laboratory Questions:

  1. Which characteristic(s) of life did the, quantitative & qualitative observations help you to identify?

  1. Which characteristic(s) of life did the drawings help you to identify?

  1. Which characteristic(s) of life did experiment 1 help you to identify?

  1. Which characteristic(s) of life did the response time chart help you to identify?

  1. Which characteristic(s) of life have you not observed in the pill bugs at this time?

  1. Which characteristic(s) of life did experiment 3 help you to identify?


Conclusion: This is an explanation of what you learned!

Paragraph 1: Intro. Restate your hypothesis and say which parts of your hypothesis are supported, which are not supported, and which need further investigation.

Paragraph 2: Evidence and arguments. Take each part of your hypothesis that was supported and explain how your data supports this conclusion. Then take each part of your hypothesis that was not supported and explain how your data shows that your guess was wrong. Be sure to include what is now the correct conclusion. Then take each part that you got no information about and explain how you would test this characteristic of life. (Double check: Did I use all 6 characteristics of life in paragraph 2? If not go back. Did I use all the pieces of data in my explanation in paragraph 2? If not go back.)

Paragraph 3: Summary and Final conclusion. Summarize what your conclusion is from paragraph 2. Include any explanations for why you may have gotten different results than you expected. These explanations may include sources of error that occurred during the experiment. (This does not mean that you can say “I did the lab wrong”, you must explain what went wrong and why that may have affected the outcome of your results/conclusions.)

Background Info

These are sow bugs, don't get these.  They don't roll up.
These are pill bugs,  notice the difference

The pill bug (also called the wood louse and the roly-poly bug) is a small, segmented land creature that can roll into a tiny ball for protection. The pill bug is NOT an insect, but is an isopod (another type of arthropod).

Collecting Live Insects
Where to find
Look under logs, moist leaf litter, flower pots (a day after they have been watered), outdoor pet dishes, and under paving bricks or stones. Isopods live where it is moist and usually in a shaded area. To attract them, water soil or leaf litter in the shade and cover with plastic, piece of plywood or cardboard. Traps made by hollowing out apples or potatoes may be used to catch them. Keep the area moist and check under the covering in a couple days. If you are unable to find isopods they can be purchased from: Carolina Biological Supply Company.

How to collect
Before looking for isopods, prepare a container and tools to gather the isopods.  To collect them, use a spoon or shovel and a container. Look under a rock or log and be prepared to collect the isopods quickly before they scurry away from the light.   Gently scoop up soil with the isopods and place them in the container. Look on the underside of the log or stone for others. They can be gently picked or brushed off with a finger into the container. Pill bugs often curl up and can be picked up individually or scooped up with the spoon. If you are going to keep the isopods a couple days before placing them in the classroom, use a plastic container with small holes poked in the lid and a moistened piece of paper towel or sponge lightly crumples inside. Use an old pie tin to sort the isopods from the soil before placing them in the container. The paper towel must be kept moist or they will die. When you are looking under rocks and logs be careful to avoid scorpions, centipedes and other animals that live there. Return the rock or log to the way it was when you found it.

How to Keep
A raw potato can be provided for food.  Food should be removed if it shows any sign of mold and replaced with sliced carrot, potato, or apple.
If you are keeping them for a longer period of time, place them in a terrarium with rich, moist soil. Place moist paper towels in the container to provide humidity. Continue to add vegetables, replacing them as necessary to control mold. Keep container at room temperature in low light.
Classroom habitat. Isopods are excellent classroom animals—they exhibit interesting behaviors, they are small but not tiny, they don’t bite, smell, fly, or jump, and they are easy to care for. Isopods can live in just about any vessel, from a recycleasd margarine tub to a 50-liter aquarium. If the container is smooth-sided, it doesn’t even have to be covered, because isopods can’t climb smooth surfaces at all. A layer of soil covered with some dead leaves, twigs, and bark is great, but isopods will be comfortable with some paper towels or newspaper laid on the soil. They do like to have some structure to crawl under.
Food and water. The most important thing to remember is that the soil must be kept moist at all times—not wet, but moist—so that the isopods don’t dry out. A chunk of raw potato in the container with the isopods serves as a source of both food and moisture. Otherwise they will eat the decomposing leaves and twigs or the paper towels and newspaper.

Ecology
Woodlice need moisture because they breathe through gills, called pseudo trachea, and so are usually found in damp, dark places, such as under rocks and logs. They are usually nocturnal and are detritivores, feeding mostly on dead plant matter. Woodlice then recycle the nutrients back into the soil. In artificial environments such as greenhouses where it can be very moist, woodlice may become abundant and damage young plants, such as ferns.
The woodlouse has a shell-like exoskeleton, which it must progressively shed as it grows. The moult takes place in two stages; the back half is lost first, followed two or three days later by the front. This method of moulting is different from that of most arthropods, who shed their cuticle in a single process.
A female woodlouse will keep fertilized eggs in a patch on the underside of her body until they hatch into small, pink offspring. The mother then appears to "give birth" to her offspring.
Some species of woodlice are able to roll into a ball-like form when threatened by predators, leaving only their armoured back exposed. This ability, or dominant behavior, explains many of the woodlouse's common names.
Metabolic rate is temperature dependent in woodlice. In contrast to mammals and birds, invertebrates are not "self heating": the external environmental temperature relates directly to their rate of respiration.
They are not generally regarded as a serious household pest as they do not spread disease and do not damage wood or structures; however, their presence can indicate dampness problems.
Habitat and Distribution:
Pill bugs are common invertebrates that are found in many biomes around the world, including temperate forests, rainforests, and grasslands. They prefer moist areas, often living in soil and under decaying leaves, rocks, and dead logs.
Life Cycle:
A pill bug begins its life as a tiny egg. The young pill bug looks almost like a miniature adult. As it grows, it molts (sheds its old, outgrown exoskeleton) 4 to 5 times.
Anatomy:
Pill bugs are covered by a hard exoskeleton (also called the cuticle) made from chitin. They have three basic body parts, the head (which is fused to the first segment of the thorax), the thorax (the 7 segments of the thorax that are not fused to the head are called the pereon), and the abdomen (which is also called the pleon). Pill bugs have 7 pairs of jointed legs and 2 pairs of antennae (but one pair is barely visible). The antennae, mouth and eyes are located on the head. A pair of abdominal uropods are at the posterior end of the pill bug, but only the terminal exopods are visible from the top of the pill bug. Pill bugs are less than an inch long.
Diet: Pill bugs eat decaying plants and animals and some living plants.
Predators: Pill bugs are eaten by many animals. Their main protection is rolling into an armored ball.
Classification: Kingdom Animalia (animals), Phylum Arthropoda, Subphylum Crustacea, Class Malacostraca, Order Isopoda (isopods), Family Armadillidiidae, Genus Armadillidium, Oniscus, etc. Many species, including A. vulgare (the common pillbug).